JDotter: A Java Dot Plot Viewer by Dr. Chris Upton, University of Victoria, Biochemistry and Microbiology

JDotter: A Java Dot Plot Viewer icon

Java Dot Plot Viewer

Java Dot Plot Alignments (JDotter) is a platform-independent Java interactive interface for the Linux version of Dotter, a widely used program for generating dotplots of large DNA or protein sequences. JDotter runs as a client-server application and can send new sequences to the Dotter program for alignment as well as rapidly access a repository of preprocessed dotplots. JDotter also interfaces with a sequence database or file system to display supplementary feature data. Thus, JDotter greatly simplifies access to dotplot data in laboratories that deal with large numbers of genomes and have a multi-platform organization. With this program, you can:

    * create whole-genome, sub-genome or protein dot plots from user-supplied sequences;
    * quickly load pre-calculated plots of complete genomes from VOCs database;
    * view and navigate the plots to pinpoint insertions/deletions and evaluate overall genome similarity;
    * print/save dot plots in JDotter or JPEG format.

Homepage: http://athena.bioc.uvic.ca.

• Application requires unrestricted access to the network and local disk.

• The application is supported on 1.5+ Java Runtime Environment versions.

You can run JDotter: A Java Dot Plot Viewer directly from this web page on any platform using the Java Web Start^*:

* — the latest version of Java Web Start is contained in the Java Software:

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Web Start Software Directory • JDotter: A Java Dot Plot Viewer

JDotter: A Java Dot Plot Viewer by Dr. Chris Upton, University of Victoria, Biochemistry and Microbiology

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